Literature

Authorssort descendingYearTitle
Angelovici, R, Fait, A, ZHU, XIAOHONG, Szymanski, J, Feldmesser, E, Fernie, AR, Galili, G2009Deciphering Transcriptional and Metabolic Networks Associated with Lysine Metabolism during Arabidopsis Seed Development
Araújo, WL, Ishizaki, K, Nunes-Nesi, A, Larson, TR, Tohge, T, Krahnert, I, Witt, S, Obata, T, Schauer, N, Graham, IA, Leaver, CJ, Fernie, AR2010Identification of the 2-Hydroxyglutarate and Isovaleryl-CoA Dehydrogenases as Alternative Electron Donors Linking Lysine Catabolism to the Electron Transport Chain of Arabidopsis Mitochondria
Araújo, WL, Ishizaki, K, Nunes-Nesi, A, Tohge, T, Larson, TR, Krahnert, I, Balbo, I, Witt, S, Dörmann, P, Graham, IA, Leaver, CJ, Fernie, AR2011Analysis of a Range of Catabolic Mutants Provides Evidence That Phytanoyl-Coenzyme A Does Not Act as a Substrate of the Electron-Transfer Flavoprotein/Electron-Transfer Flavoprotein: Ubiquinone Oxidoreductase Complex in Arabidopsis during Dark-Induced Sen
Araújo, WL, Nunes-Nesi, A, Nikoloski, Z, Sweetlove, LJ, Fernie, AR2012Metabolic control and regulation of the tricarboxylic acid cycle in photosynthetic and heterotrophic plant tissues
Araújo, WL, Nunes-Nesi, A, Osorio, S, Usadel, B, Fuentes, D, Nagy, R, Balbo, I, Lehmann, M, Studart-Witkowski, C, Tohge, T, Martinoia, E, Jordana, X, DaMatta, FM, Fernie, AR2011Antisense Inhibition of the Iron-Sulphur Subunit of Succinate Dehydrogenase Enhances Photosynthesis and Growth in Tomato via an Organic Acid-Mediated Effect on Stomatal Aperture
Brown, NJ, Palmer, BG, Stanley, S, Hajaji, H, Janacek, SH, Astley, HM, Parsley, K, Kajala, K, W. Quick, P, Trenkamp, S, Fernie, AR, Maurino, VG, Hibberd, JM2010C4 acid decarboxylases required for C4 photosynthesis are active in the mid-vein of the C3 species Arabidopsis thaliana, and are important in sugar and amino acid metabolism
Bräutigam, K, Dietzel, L, Kleine, T, Ströher, E, Wormuth, D, Dietz, K-J, Radke, D, Wirtz, M, Hell, R, Dörmann, P, Nunes-Nesi, A, Schauer, N, Fernie, AR, OLIVER, SANDRAN, Geigenberger, P, Leister, D, Pfannschmidt, T2009Dynamic Plastici Redox Signals Integrate Gene Expression and Metabolism to Induce Distinct Metabolic States in Photosynthetic Acclimation in Arabidopsis
Caldana, C, Degenkolbe, T, Cuadros-Inostroza, A, Klie, S, Sulpice, R, Leisse, A, Steinhauser, D, Fernie, AR, Willmitzer, L, Hannah, MA2011High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions
Caldana, C, Li, Y, Leisse, A, Zhang, Y, Bartholomaeus, L, Fernie, AR, Willmitzer, L, Giavalisco, P2013Systemic analysis of inducible target of rapamycin mutants reveal a general metabolic switch controlling growth in Arabidopsis thaliana
Centeno, DC, Osorio, S, Nunes-Nesi, A, Bertolo, ALF, Carneiro, RT, Araújo, WL, Steinhauser, M-C, Michalska, J, Rohrmann, J, Geigenberger, P, OLIVER, SANDRAN, Stitt, M, Carrari, F, Rose, JKC, Fernie, AR2011Malate Plays a Crucial Role in Starch Metabolism, Ripening, and Soluble Solid Content of Tomato Fruit and Affects Postharvest Softening
Dal Cin, V, Tieman, DM, Tohge, T, McQuinn, R, DE VOS, RICCH, Osorio, S, Schmelz, EA, Taylor, MG, Smits-Kroon, MT, Schuurink, RC, Haring, MA, Giovannoni, J, Fernie, AR, Klee, HJ2011Identification of Genes in the Phenylalanine Metabolic Pathway by Ectopie Expression of a MYB Transcription Factor in Tomato Fruit
DEBAST, STEFAN, Nunes-Nesi, A, HAJIREZAEI, MOHAMMADR, Hofmann, J, Sonnewald, U, Fernie, AR, BÖRNKE, FREDERIK2011Altering Trehalose-6-Phosphate Content in Transgenic Potato Tubers Affects Tuber Growth and Alters Responsiveness to Hormones during Sprouting
Do, PThi, PRUDENT, MARION, Sulpice, R, Causse, M, Fernie, AR2010The Influence of Fruit Load on the Tomato Pericarp Metabolome in a Solanum chmielewskii Introgression Line Population
DRAFFEHN, ASTRIDM, DUREK, PAWEL, Nunes-Nesi, A, STICH, BENJAMIN, Fernie, AR, Gebhardt, C2012Tapping natural variation at functional level reveals allele specific molecular characteristics of potato invertase Pain-1
Fait, A, Nesi, ANunes, Angelovici, R, Lehmann, M, Pham, PAnh, Song, L, Haslam, RP, Napier, JA, Galili, G, Fernie, AR2011Targeted Enhancement of Glutamate-to-γ-Aminobutyrate Conversion in Arabidopsis Seeds Affects Carbon-Nitrogen Balance and Storage Reserves in a Development-Dependent Manner
Fernie, AR, Aharoni, A, Willmitzer, L, Stitt, M, Tohge, T, Kopka, J, Carroll, AJ, Saito, K, Fraser, PD, De Luca, V2011Recommendations for Reporting Metabolite Data
Fernie, AR, Stitt, M2012On the Discordance of Metabolomics with Proteomics and Transcriptomics: Coping with Increasing Complexity in Logic, Chemistry, and Network Interactions
Fitzpatrick, TB, Basset, GJC, Borel, P, Carrari, F, DellaPenna, D, Fraser, PD, Hellmann, H, Osorio, S, Rothan, C, Valpuesta, V, Caris-Veyrat, C, Fernie, AR2012Vitamin Deficiencies in Humans: Can Plant Science Help?
Fuentes, D, Meneses, M, Nunes-Nesi, A, Araújo, WL, Tapia, R, Gómez, I, Holuigue, L, Gutiérrez, RA, Fernie, AR, Jordana, X2011A Deficiency in the Flavoprotein of Arabidopsis Mitochondrial Complex II Results in Elevated Photosynthesis and Better Growth in Nitrogen-Limiting Conditions
GARCHERY, CÉCILE, GEST, NOÉ, Do, PT, Alhagdow, M, Baldet, P, MENARD, GUILLAUME, Rothan, C, MASSOT, CAPUCINE, Gautier, H, AARROUF, JAWAD, Fernie, AR, Stevens, R2013A diminution in ascorbate oxidase activity affects carbon allocation and improves yield in tomato under water deficit
Geisler, DA, Päpke, C, Obata, T, Nunes-Nesi, A, Matthes, A, Schneitz, K, Maximova, E, Araújo, WL, Fernie, AR, PERSSON, STAFFAN2012Downregulation of the δ-Subunit Reduces Mitochondrial ATP Synthase Levels, Alters Respiration, and Restricts Growth and Gametophyte Development in Arabidopsis
George, GM, van der Merwe, MJ, Nunes-Nesi, A, Bauer, R, Fernie, AR, Kossmann, J, Lloyd, JR2010Virus-Induced Gene Silencing of Plastidial Soluble Inorganic Pyrophosphatase Impairs Essential Leaf Anabolic Pathways and Reduces Drought Stress Tolerance in Nicotiana benthamiana
Hannah, MA, Caldana, C, Steinhauser, D, Balbo, I, Fernie, AR, Willmitzer, L2010Combined Transcript and Metabolite Profiling of Arabidopsis Grown under Widely Variant Growth Conditions Facilitates the Identification of Novel Metabolite-Mediated Regulation of Gene Expression
Howard, TP, Fryer, MJ, Singh, P, Metodiev, M, Lytovchenko, A, Obata, T, Fernie, AR, Kruger, NJ, W. Quick, P, Lloyd, JC, Raines, CA2011Antisense Suppression of the Small Chloroplast Protein CP12 in Tobacco Alters Carbon Partitioning and Severely Restricts Growth
Kamenetzky, L, Asis, R, Bassi, S, de Godoy, F, Bermúdez, L, Fernie, AR, Van Sluys, M-A, Vrebalov, J, Giovannoni, JJ, Rossi, M, Carrari, F2010Genomic Analysis of Wild Tomato Introgressions Determining Metabolism- and Yield-Associated Traits
Karlova, R, Rosin, FM, Busscher-Lange, J, Parapunova, V, Do, PT, Fernie, AR, Fraser, PD, Baxter, C, Angenent, GC, de Maagd, RA2011Transcriptome and Metabolite Profiling Show That APETALA2a Is a Major Regulator of Tomato Fruit Ripening
Keren, I, Tal, L, Francs-Small, CC des, Araújo, WL, Shevtsov, S, Shaya, F, Fernie, AR, Small, I, Ostersetzer-Biran, O2012nMAT1, a nuclear-encoded maturase involved in the trans-splicing of nad1 intron 1, is essential for mitochondrial complex I assembly and function
Kusano, M, Tohge, T, Fukushima, A, Kobayashi, M, Hayashi, N, Otsuki, H, Kondou, Y, Goto, H, Kawashima, M, Matsuda, F, Niida, R, Matsui, M, Saito, K, Fernie, AR2011Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light
Marchive, C, Yehudai-Resheff, S, Germain, A, Fei, Z, Jiang, X, Judkins, J, Wu, H, Fernie, AR, Fait, A, Stern, DB2009Abnormal Physiological and Molecular Mutant Phenotypes Link Chloroplast Polynucleotide Phosphorylase to the Phosphorus Deprivation Response in Arabidopsis
Matas, AJ, Yeats, TH, Buda, GJ, Zheng, Y, Chatterjee, S, Tohge, T, Ponnala, L, Adato, A, Aharoni, A, Stark, R, Fernie, AR, Fei, Z, Giovannoni, JJ, Rose, JKC2011Tissue-and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation
Meitzel, T, Radchuk, R, Nunes-Nesi, A, Fernie, AR, Link, W, Weschke, W, Weber, H2011Hybrid embryos of Vicia faba develop enhanced sink strength, which is established during early development
Michaeli, S, Fait, A, Lagor, K, Nunes-Nesi, A, Grillich, N, Yellin, A, Bar, D, Khan, M, Fernie, AR, Turano, FJ, Fromm, H2011A mitochondrial GABA permease connects the GABA shunt and the TCA cycle, and is essential for normal carbon metabolism
MUTWIL, MAREK, Klie, S, Tohge, T, GIORGI, FEDERICOM, Wilkins, O, Campbell, MM, Fernie, AR, Usadel, B, Nikoloski, Z, PERSSON, STAFFAN2011PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species
Muñoz-Bertomeu, J, Cascales-Miñana, B, Irles-Segura, A, MATEU, ISABEL, Nunes-Nesi, A, Fernie, AR, Segura, J, Ros, R2010The Plastidial Glyceraldehyde-3-Phosphate Dehydrogenase Is Critical for Viable Pollen Development in Arabidopsis
Nafati, M, Cheniclet, C, Hernould, M, Do, PT, Fernie, AR, Chevalier, C, Gévaudant, F2011The specific overexpression of a cyclin-dependent kinase inhibitor in tomato fruit mesocarp cells uncouples endoreduplication and cell growth
Nashilevitz, S, Melamed-Bessudo, C, Izkovich, Y, Rogachev, I, Osorio, S, Itkin, M, Adato, A, Pankratov, I, Hirschberg, J, Fernie, AR, Wolf, S, Usadel, B, Levy, AA, Rumeau, D, Aharoni, A2010An Orange Ripening Mutant Links Plastid NAD(P)H Dehydrogenase Complex Activity to Central and Specialized Metabolism during Tomato Fruit Maturation
Nunes-Nesi, A, Araújo, WL, Fernie, AR2011Targeting Mitochondrial Metabolism and Machinery as a Means to Enhance Photosynthesis
Osorio, S, Alba, R, Damasceno, CMB, Lopez-Casado, G, Lohse, M, Zanor, MInés, Tohge, T, Usadel, B, Rose, JKC, Fei, Z, Giovannoni, JJ, Fernie, AR2011Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor (nor, rin) and Ethylene Receptor (Nr) Mutants Reveals Novel Regulatory Interactions
Osorio, S, Alba, R, Nikoloski, Z, Kochevenko, A, Fernie, AR, Giovannoni, JJ2012Integrative Comparative Analyses of Transcript and Metabolite Profiles from Pepper and Tomato Ripening and Development Stages Uncovers Species-Specific Patterns of Network Regulatory Behavior
Palmieri, F, Pierri, CL, De Grassi, A, Nunes-Nesi, A, Fernie, AR2011Evolution, structure and function of mitochondrial carriers: a review with new insights
Quadrana, L, Rodriguez, MCecilia, López, M, Bermúdez, L, Nunes-Nesi, A, Fernie, AR, Descalzo, A, Asis, R, Rossi, M, Asurmendi, S, Carrari, F2011Coupling Virus-Induced Gene Silencing to Exogenous Green Fluorescence Protein Expression Provides a Highly Efficient System for Functional Genomics in Arabidopsis and across All Stages of Tomato Fruit Development
Raschke, M, Boycheva, S, Crèvecoeur, M, Nunes-Nesi, A, Witt, S, Fernie, AR, Amrhein, N, Fitzpatrick, TB2011Enhanced levels of vitamin B6 increase aerial organ size and positively affect stress tolerance in Arabidopsis
Riebeseel, E, Häusler, RE, Radchuk, R, Meitzel, T, Hajirezaei, M-R, Emery, RJNeil, Küster, H, Nunes-Nesi, A, Fernie, AR, Weschke, W, Weber, H2010The 2-oxoglutarate/malate translocator mediates amino acid and storage protein biosynthesis in pea embryos
Mathieu-Rivet, E, Gévaudant, F, Sicard, A, Salar, S, Do, PThi, Mouras, A, Fernie, AR, Gibon, Y, Rothan, C, Chevalier, C, Hernould, M2010Functional analysis of the anaphase promoting complex activator CCS52A highlights the crucial role of endo-reduplication for fruit growth in tomato
Rocha, M, Licausi, F, Araújo, WL, Nunes-Nesi, A, Sodek, L, Fernie, AR, Van Dongen, JT2010Glycolysis and the Tricarboxylic Acid Cycle Are Linked by Alanine Aminotransferase during Hypoxia Induced by Waterlogging of Lotus japonicus
Rohrmann, J, Tohge, T, Alba, R, Osorio, S, Caldana, C, McQuinn, R, Arvidsson, S, van der Merwe, MJ, Riaño-Pachón, DMauricio, Mueller-Roeber, B, Fei, Z, Nesi, ANunes, Giovannoni, JJ, Fernie, AR2011Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development
Skirycz, A, De Bodt, S, Obata, T, De Clercq, I, Claeys, H, De Rycke, R, Andriankaja, M, Van Aken, O, Van Breusegem, F, Fernie, AR, Inzé, D2010Developmental Stage Specificity and the Role of Mitochondrial Metabolism in the Response of Arabidopsis Leaves to Prolonged Mild Osmotic Stress
Steinhauser, M-C, Steinhauser, D, Gibon, Y, Bolger, M, Arrivault, S, Usadel, B, Zamir, D, Fernie, AR, Stitt, M2011Identification of Enzyme Activity Quantitative Trait Loci in a Solanum lycopersicum X Solanum pennellii Introgression Line Population
Sulpice, R, Trenkamp, S, Steinfath, M, Usadel, B, Gibon, Y, Witucka-Wall, H, PYL, EVA-THERESA, Tschoep, H, Steinhauser, MCaroline, Guenther, M, Hoehne, M, Rohwer, JM, Altmann, T, Fernie, AR, Stitt, M2010Network Analysis of Enzyme Activities and Metabolite Levels and Their Relationship to Biomass in a Large Panel of Arabidopsis Accessions
Tahir, J, Watanabe, M, Jing, H-C, Hunter, DA, Tohge, T, Nunes-Nesi, A, Brotman, iv, Y, Fernie, AR, Hoefgen, R, Dijkwel, PP2013Activation of R-mediated innate immunity and disease susceptibility is affected by mutations in a cytosolic O-acetylserine (thiol) lyase in Arabidopsis

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Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith